Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSGYAERATTRRRQAGFTLIEVMVAIMLMAIVSLMAWRGLDSIARASAHLEDSTEQGAALLRALNQLERDIALHSAIREETGLPSGDEPIRAGDSLPPGLAL--K-RLSEIPLRLDIVRASTE------PGAPLQRVRWWRQGKVLYRAASPSGDRLPLPPLAERVAVLDDVSRFDIRAWVPGKGWTRLPARSKVRASGLEISLARVTRNGVERYRRVVALQ |
2RET Chain:B ((9-167)) | -----------------------------------------------ELSQERTARLNELQRALVMMDSDFRQIALRQTRT--------------SK-KLLHWADYLLDSDNKGIMFARLGWHNPQQQFPRGEVTKVGYRIKDERLERVWWRYPDTP---QEGVVTPLLSDVEELNVRFYDG-KQWINEWSNELTLPAAISVELTLKD-YG--KIARTYLTP |
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General information:
TITO was launched using:
| RESULT:
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Template: 2RET.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -31956 for 985 contacts (-32.4/contact) +
2D Compatibility (PS) -14938 + (NN) -5637 + (LL) 4752
1D Compatibility (HY) -1200 + (ID) 1200
Total energy: -50179.0 ( -50.94 by residue)
QMean score : 0.373
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