Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADETELKRLYWHS-RRGMLELDVLLVPFVQEVYPGLDAEDQARFRKLLECEDQDMFGWFMQRG---EPEDADL-RRMVRMILDRVQPD
2LM4 Chain:A ((18-104))
-PLDKKRARLIYQSRKRGILETDLLLSGFAAKYLKKMNEEELEEYDSLLNELDWDIYYWATKNFKTSPLPDKWANSKLLKQLQEFSENK
General information:
TITO was launched using:
RESULT:
Template:
2LM4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43739 for 544 contacts (-80.4/contact) +
2D Compatibility (PS) -8857 + (NN) -5958 + (LL) 208
1D Compatibility (HY) -4000 + (ID) 900
Total energy: -63246.0 ( -116.26 by residue)
QMean score : 0.762
(partial model without unconserved sides chains):
PDB file :
Tito_2LM4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LM4-query.scw
PDB file :
Tito_Scwrl_2LM4.pdb
: