Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTAESPTIR-LERYSERHVEGLTALYNDPAVARQVLQMPYQSVEQ----RRKRLHDSADDDRLLILVALHQGDVIGSASLEQHPRIRRSHSGSIGMGVAVAWQGKGVGSRLLGELLDIADNWMNLRRVELTVYTDNAPALALYRKFGFETEGEMRDYAVRDGRFVDVYSMARLRRVEGRVGE
4NCZ Chain:A ((9-161))
------TLRALERGDLRFIHNLN---NNRNIMSYWFEEPYESFDELEELYNKHIHDNAER-RFVVEDA--QKNLIGLVELIEINYIHRS--AEFQIIIAPEHQGKGFARTLINRALDYSFTILNLHKIYLHVAVENPKAVHLYEECGFVEEGHLVEEFFINGRYQDVKRMYILQSKYLNR--
General information:
TITO was launched using:
RESULT:
Template:
4NCZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50063 for 950 contacts (-52.7/contact) +
2D Compatibility (PS) -15229 + (NN) -2193 + (LL) 976
1D Compatibility (HY) -12000 + (ID) 2400
Total energy: -80909.0 ( -85.17 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_4NCZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NCZ-query.scw
PDB file :
Tito_Scwrl_4NCZ.pdb
: