Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLPFATIPATERNSAAQHQDPSPMSQPFDLPALASSLADKSPQDILKAAFEHFGDELWISFSGAEDVVLVDMAWKLNRNVKVFSLDTGRLHPETYRFIDQVREHYGIAIDVLSPDPRLLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRKLAGVRAWATGQRRDQSPGTRSQVAVLEIDGAFSTPEKPLYKFNPLSSMTSEEVWGYIRMLELPYNSLHERGYISIGCEPCTRPVLPNQHEREGRWWWEEATHKECGLHAGNLISKA
2GOY Chain:D ((27-249))
--------------------------PFDLPALASSLADKSPQDILKAAFEHFGDELWISFSGAEDVVLVDMAWKLNRNVKVFSLDTGRLHPETYRFIDQVREHYGIAIDVLSPDPRLLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRKLAGVRAWATGQRRDQSPGTRSQVAVLEIDGAFSTPEKPLYKFNPLSSMTSEEVWGYIRMLELPYNSLHERGYISIGCEPCTRPVLPNQHEREGRWWWE------------------
General information:
TITO was launched using:
RESULT:
Template:
2GOY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89342 for 1738 contacts (-51.4/contact) +
2D Compatibility (PS) -23826 + (NN) -11486 + (LL) 2484
1D Compatibility (HY) -31200 + (ID) 11150
Total energy: -164520.0 ( -94.66 by residue)
QMean score : 0.437
(partial model without unconserved sides chains):
PDB file :
Tito_2GOY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GOY-query.scw
PDB file :
Tito_Scwrl_2GOY.pdb
: