Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLAGSFAALFLSLSAQAADCTFTQLEIVPQFGSPNMFGGEDEHVRVMFSNEDPNDDNPDAFPEPPVYLADRDSGNDCRIEDGGIWSRGGVFLSQDGRRVLMHEFSGSSAELVSYDSATCKVVHREDISGQRWAVDKDGLRLGQKCSGESVDSCAKIVKRSLAPFCQTAKK
1JMX Chain:B ((299-339))
------------------------------------------------------------------------------------------CVAFDKKGDKLYLGGTF---NDLAVFNPDTLEKVKNIKLPGGDMSTTTPQVFIR----------------------------
General information:
TITO was launched using:
RESULT:
Template:
1JMX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8230 for 211 contacts (-39.0/contact) +
2D Compatibility (PS) -4405 + (NN) -3262 + (LL) 4684
1D Compatibility (HY) -2800 + (ID) 300
Total energy: -14313.0 ( -67.83 by residue)
QMean score : 0.363
(partial model without unconserved sides chains):
PDB file :
Tito_1JMX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JMX-query.scw
PDB file :
Tito_Scwrl_1JMX.pdb
: