Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGIPEITAYPLPTAQQLPANLARWSLEPRRAVLLVHDMQRYFL----RPLPESLRAGLVANAARLRRWCVEQGVQIAYTAQPGSMTEEQRGLLKDFWGPGMRASPADREVVEELAPGPDDWLLT-------KWRYSAFFHSDLLQRMRAAGRDQLVLCGVYAHVGVLISTVDAYSNDIQPFLVADAIADFSEAHHRMALEYAASRCAMVVTTDEVLE
1ILW Chain:A ((6-178))
---------------------------------LIVVDMQRDFMPGGALPVPEGDK--IIPKVNEYIRKFKEKGALIVATR---DWHPENHISFRERGGPWPRHCVQNTPGAEFVVDLPEDAVIISKATEPDKEAYSGFEGTDLAKILRGNGVKRVYICGVATEYCVRATALDALKHGFEVYLLRDAVKGIKPEDEERALEEMKSRGIKIVQF-----
General information:
TITO was launched using:
RESULT:
Template:
1ILW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130156 for 1299 contacts (-100.2/contact) +
2D Compatibility (PS) -16898 + (NN) -4290 + (LL) 2428
1D Compatibility (HY) -6400 + (ID) 2250
Total energy: -157566.0 ( -121.30 by residue)
QMean score : 0.398
(partial model without unconserved sides chains):
PDB file :
Tito_1ILW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ILW-query.scw
PDB file :
Tito_Scwrl_1ILW.pdb
: