Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MSVIIALAALGLLMLAAYRGYSVILFAPLAALGAVLLTDPSAVAPTFTGVFMEKMVGFIKLYFPVFLLGAVFGKLIELAGFSRSIVAAAIRLLGTRQAMLVIVLVCALLTYGGVSLFVVVFAVYPFAAEMFRQSDIPKRLIPAT---IALGAFSFTMDALPGTPQIQNIIPSTFFGTHAWAAPWLGTLGALFVFAVGMLYLRRQANKARRNGEGYGSDLRNEPETADDLRLPNPWLALSPLVLVGVANLLFTHWIPQWYGQVHTLQLAGMATPLQTEVGK----LTAIWAVQAALLLG-ILLVLASGFAAIRSRLAEGTRSAVAGSLLAAMNTA---SEYGFGAVIASLPGFLVLADALKSIPNPLVNEAITVTLLAGITGSASGGMSIALAAMSDTFIAAANAAQIPLEVLHRVAAMASGGMDTLPHNGAVITLLAVTGLTHREAYKVIF-GITLIKTLAVFFVIGLFYATGLV---------------- |
| 4OC8 Chain:A ((2-388)) | TFFTGETLGQVDLIVDAVYAGYKT-------ERGG--MADP----------------------------------LVPLVGVSRQ---GGFRYRGTRERPTLLVLTSNL-----------------------AEPEWPDQLDETTGTFIYYGDNRHPGRLLHDTPRFGNQLLRQIFDWAHLGQRHL--VPPILVFTT----------------EATGRTFRFR-----GLAVPGSPALAATEDLVALWKTTEGQRFQNYKAVFTILDEAVIPRAWVHAVGRGETSGLAPVAWNAWLSAGGIRPLMAPRSLLVRSKAEQLPATPEDQALIEVIRQRYKENPFGFEACAGALTRLLLPDVARLDLTRPWRDGGRDGIGRLRI-GQSPAAIEVDFALEAKCY---GANNAVGVKEVSRLISR-------IKHRE--FGVLVTTSYVDRQAYQEVTDDGHPVILTTAQDIVGLLRSAGVRTPTQVDAWLDGITASV |
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General information:
TITO was launched using:
| RESULT:
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Template: 4OC8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -298895 for 2711 contacts (-110.3/contact) +
2D Compatibility (PS) -36372 + (NN) 1275 + (LL) 8700
1D Compatibility (HY) -11600 + (ID) 3750
Total energy: -340642.0 ( -125.65 by residue)
QMean score : 0.135
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