Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQTNLDDTLDVLNDLLQTSKDGEAGFHACAEDLRD---PQLKAAMLEQSRDCAAAADELERIVLELGGKPKDSTSFAGDLHRRWVDLKSLVTGKDEEAVLNECERGEDVAKHRYQAALEKS---LPAEIHQVIERQYQGVLRHHDRVRALRDARA
2VXX Chain:A ((23-171))
--KATTTPICEGMNRLLASFQALYLQYQKHHFVVEGAEFYPLHQFFQDCYEQVQDHVHALGERLNGLGGVPVAGFQQLAALC-CFTPEP--EGAFNCRQMLSNDLQAEQAIIGVLRQQATQAESLGDRATAYLYDQILLKTEERAYHIGHFLANDS
General information:
TITO was launched using:
RESULT:
Template:
2VXX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6576 for 1066 contacts (-6.2/contact) +
2D Compatibility (PS) -15531 + (NN) -6466 + (LL) 376
1D Compatibility (HY) -2000 + (ID) 600
Total energy: -30797.0 ( -28.89 by residue)
QMean score : 0.677
(partial model without unconserved sides chains):
PDB file :
Tito_2VXX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VXX-query.scw
PDB file :
Tito_Scwrl_2VXX.pdb
: