Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSVFDRDDIQFQVVVNHEEQYSIWPEYKEIPQGWRAAGKSGLKKDCLAYIEEVWTDMRPLSLRQHMDKAAG
4GR5 Chain:D ((6-76))
--NPFEEYDGGHVVLTDALGRHSLWPAGIAVPAGWSVRHGTDSREGCLAHIEHHWTDLRP------------
General information:
TITO was launched using:
RESULT:
Template:
4GR5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19120 for 348 contacts (-54.9/contact) +
2D Compatibility (PS) -6276 + (NN) -2082 + (LL) 1160
1D Compatibility (HY) -1200 + (ID) 950
Total energy: -28468.0 ( -81.80 by residue)
QMean score : 0.386
(partial model without unconserved sides chains):
PDB file :
Tito_4GR5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GR5-query.scw
PDB file :
Tito_Scwrl_4GR5.pdb
: