Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPLIKTILSTNAGAGLAILRIV-----TGLTLMSHGSQKLFGMFGGAGLNGMAQWFESIGLTPGYLLATLAGSAEFFGGLALVIGLLVRPASVVVGFTMIVAIFSVHIGNGFFITDNGYEYALTLLM----ISVALLIDGAGKFSLDGKLSR------------
2L82 Chain:A ((1-162))
MSQIFVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVE---DKEDFRENIREIWERYPQLDVVVIVTTDDKEWIKDFIEEAKERGVEVFVVYNNKDDDRRKEAQQEFRSDGVDVRTVSDKEELIEQVRRFVRKVGSLEHHHHHH
General information:
TITO was launched using:
RESULT:
Template:
2L82.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110871 for 1073 contacts (-103.3/contact) +
2D Compatibility (PS) -14781 + (NN) 589 + (LL) 208
1D Compatibility (HY) 800 + (ID) 700
Total energy: -124755.0 ( -116.27 by residue)
QMean score : 0.235
(partial model without unconserved sides chains):
PDB file :
Tito_2L82.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2L82-query.scw
PDB file :
Tito_Scwrl_2L82.pdb
: