Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDKSVLSCRNLSKSYDEGPQSVQVLSGVELNLLPGERVAIVGSSGSGKSTLLNMLGGLDTPSAGSVWLAGEELSALNETARGLLRNRALGFVYQFHHLLPEFTALENVCMPLLIGRTPIAEARQRAAELLERVGLGHRLSHKPAELSGGERQRVAIARALVNRPQLVLLDEPTGNLDQHTAQGIQELMLELSRSLQTSFLVVTHD-LQLAGHMDRILRLEEGRLIAA
1OXU Chain:A ((6-220))
--------VKNVSKVFKKG--KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF-DDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLV--
General information:
TITO was launched using:
RESULT:
Template:
1OXU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106407 for 1712 contacts (-62.2/contact) +
2D Compatibility (PS) -23930 + (NN) -14559 + (LL) 840
1D Compatibility (HY) -16800 + (ID) 4200
Total energy: -165056.0 ( -96.41 by residue)
QMean score : 0.451
(partial model without unconserved sides chains):
PDB file :
Tito_1OXU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OXU-query.scw
PDB file :
Tito_Scwrl_1OXU.pdb
: