Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAQKIVRVGDIQIGNDLPFVLFGGMNVLESRDLAMQVCEEYVRVTEKLGIPYVFKASFDKANRSSIHSFRGPGLEEGMKIFEEIKKTFKVPVITDVHEPFQAQPVAEVCDIIQLPAFLSRQTDLVVAMARTNAVINIKKAQFLAPQEMKHILTKCEEAGNDRLILCERGSSFGYNNLVVDMLGFGIMKQFE--YPVFFDVTHALQMPGGRADSAGGRRAQVTDLAKAGLSQKLAGLFLEAHPDPEHAKCDGPCALRLNKLEAFLSQLKQLDELIKSFPAIETA
3E9A Chain:A ((4-284))
MEHKIVHVGDIPVANDKPFTLFAGMNVLESRDLAMQICEHYVKVTDKLGIPYVFKASFDKANRSSVHSYRGPGLEEGMKIFQELKETFGVKIITDVHTEAQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFMSPGQVGNIVEKFAECGNDKVILCERGSCHGYDNLVVDMLGFGVMKQASNGSPIIFDVTHSLQ-----------RREQTVELAKAGLATGIAGLFIEAHPNPDKARCDGPSALPLDKLEPFLAQMKALDDLIKSFAHID--
General information:
TITO was launched using:
RESULT:
Template:
3E9A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -180068 for 2325 contacts (-77.4/contact) +
2D Compatibility (PS) -29459 + (NN) -17502 + (LL) -140
1D Compatibility (HY) -33600 + (ID) 9350
Total energy: -270119.0 ( -116.18 by residue)
QMean score : 0.545
(partial model without unconserved sides chains):
PDB file :
Tito_3E9A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3E9A-query.scw
PDB file :
Tito_Scwrl_3E9A.pdb
: