Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDRLQIEDLLLGDGKEVVKGALITTQYKGTLEDGTLFDSSYERGRPFQCVIGTGRVIKGWDQGLMG------MKVGGKRRLFVPSHLAYGERQVGAH-----IKPHSNLLFEIELLEVLTRDD
1U79 Chain:A ((14-126))
----LAFCDKVVGYGPEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI-------
General information:
TITO was launched using:
RESULT:
Template:
1U79.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49622 for 742 contacts (-66.9/contact) +
2D Compatibility (PS) -10554 + (NN) 762 + (LL) 624
1D Compatibility (HY) -10400 + (ID) 2800
Total energy: -71990.0 ( -97.02 by residue)
QMean score : 0.464
(partial model without unconserved sides chains):
PDB file :
Tito_1U79.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U79-query.scw
PDB file :
Tito_Scwrl_1U79.pdb
: