Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQLKDKVIIITGGCQGLGRAMGEYLAGKGARLALVDLNRERLDEAVAA--CKAAGGDARAYVCNVADEEQVTHMVAQVASDFGAINGLVNNAGILRDGLTIKVKDGQLSKMSLAQWQSVIDVNLTGVFLCTREVAAKMIELKNEGAIVNISSI-SRAGNMGQANYSAAKAGVAADTVVWAKELARYGIRVAGVAPGFIETEMTAGMKPEALEKMTAGIPLKRMGKPVEIAHSVAYIFEN--DYYTGRVLELDGGLRL |
| 2PNF Chain:A ((3-247)) | IKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGER-AKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVDGIDILVNNAGITRDKLFLR--------MSLLDWEEVLKVNLTGTFLVTQNSLRKMIK-QRWGRIVNISSVVGFTGNVGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAVLSEEIKQKYKEQIPLGRFGSPEEVANVVLFLCSELASYITGEVIHVNGGM-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PNF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -113280 for 2043 contacts (-55.4/contact) +
2D Compatibility (PS) -25759 + (NN) -6140 + (LL) 968
1D Compatibility (HY) -20400 + (ID) 5100
Total energy: -169711.0 ( -83.07 by residue)
QMean score : 0.527
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