Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKLNYFQGALYPWRFCVIVGLLLAMVGAIVWRIVDLHVIDHDFLKGQGDARSVRHIAIPAHRGLITDRNGEPLAVSTPVTTLWANPKELMTAKERWPQLAAA----LGQDTKLFADRIEQNAEREFIYLVRG-------LTPEQGEGVIALKVPGVYSIEEFRRFYPAGEVVAHAVGFTDVDDR--------GREGIELAFDEWLAGVPGKRQVLKDRRGRVIKDVQVTKNAKPGKTLALSIDLRLQYLAHRELRNALLENGAKAGSLVIMDVKTGEILAMTNQPTYNPNNRRNL-QPAAMRNRAMIDVFEPGSTVKPFSMSAALASGRWKPSDIVDVYPGTLQIGRYTIRDVSRNS-----RQLDLTGILIKSSNVGISKIAFDIGAESIYSVMQQVGLGQDTGLGFPGERVGNLPNHRKWPKAETATLAYGYGLSVTAIQLAHAYAALANDG-----KSVPLSMTRVDRVPDGVQV------ISPEVASTVQGMLQQV---------VEAQGGVFRAQVPGYHAAGKSGTARKVSVGTKGYRENAYRSLFAG--FAPATDPRIAMVVVIDEPSK-AGYFGGLVSAPVFSKVMAGALRLMNVPPDNLPTATEQQQVNAAPAKGGRG |
| 1PYY Chain:A ((25-565)) | ----------------------------------------------------------PAKRGTIYDRNGVPIAEDATSYNVYA------------NKVAEVFHKYLDMEESYVREQL-------VSFGAKGNGITYANMMS-------------------PNRSYPNGQFASSFIGLAQLHENEDGSKSLLGTSGMESSLNSILAGTD------------------------DGKDVYTTISSPLQSFMETQMDAFQEKVKGKYMTATLVSAKTGEILATTQRPTFDADTKEGITEDFVWRDILYQSNYEPGSAFKVMMLAAAIDNNTFPGGEVFN--SSELKIADATIRDWDVNEGLTGGRMMTFSQGFAHSSNVGMTLLEQKMGDATWLDYLNRFKFGVPTRFGLTDEYAGQLPADNIVNIAQS---SFGQGISVTQTQMIRAFTAIANDGVMLEPKFISAIYDPNDQTARKSQKEIVGNPVSKDAASLTRTNMVLVGTDPVYGTMYNHSTGKPTVTVPGQNVALKSGTAQIADEKNGGYLVGLTDYIFSAVSMSPAENPDFILYVTVQQPEHYSGIQLGEFANPILERASA-------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PYY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -158955 for 3525 contacts (-45.1/contact) +
2D Compatibility (PS) -44928 + (NN) -13290 + (LL) 11724
1D Compatibility (HY) -16400 + (ID) 5650
Total energy: -227499.0 ( -64.54 by residue)
QMean score : 0.450
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