Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSADKPEQPEHDQEMPLVSHLTELRTRLLRSVAAIFLIFAGLFYFSQKIYTLVSEPLRRFLPEGTSMIATDVASPFLAPFKLTMVVALFLAMPVILAQVWGFIAPGLYKHEKRVALPLLVSSIILFYAGMAFAYFLVFPMIFHFFASVTPEGVAMMTDINSYLDFVLTLFFAFGVAFEIPVATVLLIWIGVVDVDYLKKIRPYVIIGCFVVGMVLTPPDIFSQTMLAVPMWLLFEIGLLFGRLV---RKRGEHPDDQPASDGDQPPATRQ |
| 3VGA Chain:A ((33-130)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------LNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHGCLFIACFV--LVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKG------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3VGA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -75292 for 482 contacts (-156.2/contact) +
2D Compatibility (PS) -8751 + (NN) 3419 + (LL) 14508
1D Compatibility (HY) -8800 + (ID) 1250
Total energy: -76166.0 ( -158.02 by residue)
QMean score : 0.150
|
|
|