Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFNTEVQPGICMEPDAITQEYVFNHTMLRVKDPKRSLDFYSRVLGMRLLRRLDFEEGRFSLYFLAMTRGEEVPDAVDERQRYTFGRQSVLELTHNWGSESDDSQ-YHNGNQDPRGFGHICFSVPDLVAACERFETLGVNFVKPLDRG-MKNVAFISDPDGYWVEIVQASLNGEMGRG
1QIP Chain:A ((13-174))
-----EAALSCCSDADPSTKDFLLQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEIL-----------
General information:
TITO was launched using:
RESULT:
Template:
1QIP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76791 for 1045 contacts (-73.5/contact) +
2D Compatibility (PS) -17532 + (NN) -11065 + (LL) 512
1D Compatibility (HY) -18000 + (ID) 4500
Total energy: -127376.0 ( -121.89 by residue)
QMean score : 0.449
(partial model without unconserved sides chains):
PDB file :
Tito_1QIP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QIP-query.scw
PDB file :
Tito_Scwrl_1QIP.pdb
: