Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLIIPAIDLKDGACVRLRQGLMEDATVFSDDPVAMAAKWVDGGCRRLHLVDLNGAFEGKPVNGEVVTAIARRYPDLPIQIGGGIRSLETIEHYVRAGVSYVIIGTKAVKQPEFVGEACRAFPGKVIVGLDAKDGFVATDGWAEVSEVQVIDLARRFEADGVSAIVYTDISKDGMMQGCNVEATAALANATRIPVIASGGI---HNLGDIQKLLDARTPGII-GAITGRAIYEGTLDVAEAQALCDNFKA
2W79 Chain:A ((1-233))
MLVVPAIDLFRGKVARMIKGRKENTIFYEKDPVELVEKLIEEGFTLIHVVDLSNAIENSGENLPVLEKLS-EFAEY-IQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSSL-KSLREIDVEPVFSLVTRGGRVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKVGTLQEHDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQK-VHTETNGLLKGVIVGRAFLEGILTV------------
General information:
TITO was launched using:
RESULT:
Template:
2W79.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -173733 for 1890 contacts (-91.9/contact) +
2D Compatibility (PS) -25372 + (NN) -16060 + (LL) 1036
1D Compatibility (HY) -19600 + (ID) 3900
Total energy: -237629.0 ( -125.73 by residue)
QMean score : 0.569
(partial model without unconserved sides chains):
PDB file :
Tito_2W79.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2W79-query.scw
PDB file :
Tito_Scwrl_2W79.pdb
: