Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATPAYMSITGTKQGLITAGAFTEDSVGNTYQEGHEDQVMVQGFNHEVIIPRDPQSGQPTGQRVHKPVVITKVFDKASPLLLAALTSGERLTKVEIQWYRTSAAGTQEHYYTTVLEDAIIVDIKDYMHNCQDPGNAHFTHLEDVHFTYRKITWTHEVSGTSGSDDWRSPVAG
4HKH Chain:D ((3-157))
--IPVYLWLKDD------GGADIKGSVDVQDREG---SIEVVAQEHCLYIP----TGKLTGTRIHTPFLFTKEIDSSSPYLYKAVTTGQTLKSAEFKWYKIW---QEVEYFNTKLENVKVVKVNPVMHDI-------HNHLEQVELRYEKITWTYKDGNIIHSDAW------
General information:
TITO was launched using:
RESULT:
Template:
4HKH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53833 for 978 contacts (-55.0/contact) +
2D Compatibility (PS) -15463 + (NN) -5441 + (LL) 924
1D Compatibility (HY) -11200 + (ID) 2550
Total energy: -87563.0 ( -89.53 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_4HKH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HKH-query.scw
PDB file :
Tito_Scwrl_4HKH.pdb
: