Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIILMGLPGAGKGTQASEIVKKFPIPHISTGDMFRKAIKEETELGKEAKSYMDRGELVPDEVTVGIVKERISEDDAKKGFLLDGFPRTIEQAEALNNIMSELDRNIDAVINIEVPEEELMNRLTGRRICESCGTTYHLVFNPPKVEGICDIDGGKLYQREDDNPETVANRLSVNIKQSKPILDFYDQKGVLKNIDGSKDISDVTKDVIDILDHL
2CDN Chain:A ((21-200))
MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRA-------------------------------DDTDDVILNRMKVYRDETAPLLEYYRDQ--LKTVDAVGTMDEVFARALRALG--
General information:
TITO was launched using:
RESULT:
Template:
2CDN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68293 for 1405 contacts (-48.6/contact) +
2D Compatibility (PS) -19308 + (NN) -9634 + (LL) 1392
1D Compatibility (HY) -16400 + (ID) 3850
Total energy: -116093.0 ( -82.63 by residue)
QMean score : 0.611
(partial model without unconserved sides chains):
PDB file :
Tito_2CDN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CDN-query.scw
PDB file :
Tito_Scwrl_2CDN.pdb
: