Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MESVKTVKTNKVGKNTETANTEASKETHFKQASAITNTLRSIGGIFTKIAKKVRELVKKHPKKSSVALVVLTHIACKRAKELDDKVQDKSKQAEKENQINWWKYSGLTIAASLLLAACSTGDIDKQIELEQEKKEANKSGIKLEQ---ERQKTEQERQKTNKSEIELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQKANKSEIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQEKHGQLFIKKARIKTGITTGIAIEIEAECKTPKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQELIAYLQKELESLPYSQKAIAKQVDFYKPSSIAYLELDPRDFKVT---EEWQKENLKIRSKAQAKMLEMRNPQAHLPTSQSLLFVQKIFADINKEIEAVANTEKKTEKAGYGYSKRM |
4TKO Chain:B ((3-349)) | -HRIEYAITNA-------VFVKADELSYLSF---------RVSGKVIEVYKDLGDYVKRGE-----ALAKLDPTYYELEKRTLEKKMSALLEKKKALEIKIQKLEK-GLHISLSAKKLKVESLKKKREALREKLLQVEEKIKLVKLDWERYKSLFQKGLIPRRKFEEVDTNLKVLLHEREYLEKSIQEINTEIKRAKKGIENARNEFKTIEELKKELSSLEEEIKSLKERIKTAEQKIKDT----------VLIAPFDGVVAKRFIS----------------------------RG----------------------------DVVRAGQPAFALVNPESFYVEVLLEETKLKGVKVGNKAYVRLDAYPDIL-FEGVVEEISPVQRIPVKIKITKGDLSLL--RVGMGGEVEIRRT |
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General information:
TITO was launched using:
| RESULT:
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Template: 4TKO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 143375 for 2066 contacts (69.4/contact) +
2D Compatibility (PS) -33642 + (NN) 434 + (LL) 6324
1D Compatibility (HY) -5200 + (ID) 3000
Total energy: 108291.0 ( 52.42 by residue)
QMean score : 0.260
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