Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LEKERFRTELIGEKIGQLCKTYQFTYGYRKIAALMKQEEQ------VGINKVQRIMQKYQWQCQVKVKKKNRPGSAYYQTENHLNRNFQASQPLEKLTTDITYLYFGDCRLYLSSIMDLYNGEIVAYSIGEKQTQN
3JAM Chain:N ((29-82))
------SSDGVVEQIIKYARK---GLTPSQIGVLLRDAHGVTQAKVITGNKILRILKSNGLAP-------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3JAM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21171 for 302 contacts (-70.1/contact) +
2D Compatibility (PS) -5151 + (NN) -1560 + (LL) 5560
1D Compatibility (HY) -2400 + (ID) 400
Total energy: -25122.0 ( -83.19 by residue)
QMean score : 0.714
(partial model without unconserved sides chains):
PDB file :
Tito_3JAM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JAM-query.scw
PDB file :
Tito_Scwrl_3JAM.pdb
: