Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKAIVMDFDGIVIDTEVVWYEIFKEWFKTKQNYD-LSIEEFLQCVGSNVDDLFRELNEKNQMDINRQVFEAETQATFIENS-KSLPAKEGVESFIRELKERGLKLALATSSQRPKPLYHLERLGLLEYFDAIITAEDVTRIKPEPDLFLEALRALDVKASESLIVEDSRNGLLAGNSAGVNVLVIPNEVTKHSD--LTPNYLERESLAEVDLTEIMAEYNK
3D6J Chain:A ((5-214))
KYTVYLFDFDYTLADSSRGIVTCFRSVLER-HGYTGITDDMIKRTIGKTLEESFSILTGITD-ADQLESFRQEYSKEADIYMNANTILFPDTLPTLTHLKKQGIRIGIISTKYRFRILSFLRNHMPDDWFDIIIGGEDVTHHKPDPEGLLLAIDRLKACPEEVLYIGDSTVDAGTAAAAGVSFTGVTSGMTTAQEFQAYPYDRIISTLGQL--I--------
General information:
TITO was launched using:
RESULT:
Template:
3D6J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60191 for 1737 contacts (-34.7/contact) +
2D Compatibility (PS) -22349 + (NN) -10123 + (LL) 1212
1D Compatibility (HY) -6000 + (ID) 2050
Total energy: -99501.0 ( -57.28 by residue)
QMean score : 0.516
(partial model without unconserved sides chains):
PDB file :
Tito_3D6J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D6J-query.scw
PDB file :
Tito_Scwrl_3D6J.pdb
: