Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNKRVAFILGGSGGIGKAVVQKLVEQNFAVAVHYAGNKAKAETLVENIVKSGGEAISVGGDVADEAQMIRAFDFIESQFGGIDVVINTAGIMKLSPIATLDMDDFDLIQRTNVRGTFVVSKQAALRVRN---GGAIINFSTSVTRTSFPTYGAYVASKAGVESLTLILARELRGKDITVNAVAPGPTATPLFLTGKD-DKTIDNLAKATPLERLGQPEDIAETVAFLAGP-ARWVNGQVIFTNGGLA
1GEE Chain:A ((5-250))
-LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGYIGEPEEIAAVAAWLASSEASYVTGITLFADGGM-
General information:
TITO was launched using:
RESULT:
Template:
1GEE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115308 for 2061 contacts (-55.9/contact) +
2D Compatibility (PS) -26632 + (NN) -15018 + (LL) 352
1D Compatibility (HY) -14000 + (ID) 3850
Total energy: -174456.0 ( -84.65 by residue)
QMean score : 0.497
(partial model without unconserved sides chains):
PDB file :
Tito_1GEE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GEE-query.scw
PDB file :
Tito_Scwrl_1GEE.pdb
: