Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAIDKLVKASHLIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNPFAVKEGLLILE
3UWB Chain:A ((3-150))
----------------LKIKTIGDRCLRQKSEEVEF-DKKEMSELYDQMCEAMW------------ASDGIGLAAPQVGINKRVIVVDETTEEH---------GKYAHLMVNPKITWKSEEKV--LFDEGCLSVPD-QNGEVLRPKSIKVTFQNKDGKYKKWKLDGLAARVVQHEIDHLEGILFVDYFN---------------
General information:
TITO was launched using:
RESULT:
Template:
3UWB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43523 for 1144 contacts (-38.0/contact) +
2D Compatibility (PS) -15727 + (NN) -4194 + (LL) 3844
1D Compatibility (HY) -9600 + (ID) 2750
Total energy: -71950.0 ( -62.89 by residue)
QMean score : 0.508
(partial model without unconserved sides chains):
PDB file :
Tito_3UWB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UWB-query.scw
PDB file :
Tito_Scwrl_3UWB.pdb
: