Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAMTARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWGVPGLSWLPGEDPDPFGH
4DR8 Chain:A ((16-185))
KPPLDLHYLGDRVLRQPAKRVSRI-----DDELRQTIRQMLQTMYSADGIGLAAPQVGINKQLIVIDLELEDE--QAPPLVLINPKIERTA-----GDLEQCQEGCLSIPGVYLDVERPEIVEVSYKDENGRPQRLVADGLLARCIQHEMDHLNGVLFVDRVENRLELN--EALDKKGFAVQAV-------------
General information:
TITO was launched using:
RESULT:
Template:
4DR8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88807 for 1300 contacts (-68.3/contact) +
2D Compatibility (PS) -18051 + (NN) -3682 + (LL) 608
1D Compatibility (HY) -15200 + (ID) 2900
Total energy: -128032.0 ( -98.49 by residue)
QMean score : 0.379
(partial model without unconserved sides chains):
PDB file :
Tito_4DR8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DR8-query.scw
PDB file :
Tito_Scwrl_4DR8.pdb
: