Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNVMLITGASRGIGAATALLAAERGYAVVLNYLRNREAAEALRQRIERQGGEALAVAADVAEEGDVERLFASIDERFGRLDVLVNNAGMLEAQTRLENIDAARLHRVFATNVTGSFLCAREAVKRLSTRHGGRGGSIVNVSSMASRLGSPNEYIDYAAAKGAIDSMTIGLAREVAAEGIRVNAVRPGLIDTEIHASGGEPG-RIERLKGGIPLGRGGTAEEVARAILWLASDEASYSTGTFIDVSGGR
1GEE Chain:A ((6-250))
EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPV-SSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVEND--IKGTVINMSSVHEKIPWPLF-VHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGYIGEPEEIAAVAAWLASSEASYVTGITLFADGGM
General information:
TITO was launched using:
RESULT:
Template:
1GEE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111500 for 2090 contacts (-53.3/contact) +
2D Compatibility (PS) -26942 + (NN) -13931 + (LL) -200
1D Compatibility (HY) -16800 + (ID) 4700
Total energy: -174073.0 ( -83.29 by residue)
QMean score : 0.609
(partial model without unconserved sides chains):
PDB file :
Tito_1GEE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GEE-query.scw
PDB file :
Tito_Scwrl_1GEE.pdb
: