Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----------MKPIFAVGDVHGEITLLDELLE--NWDKERERLLFVGDLIDRGENPAAVLRRVKALADQTGAIVLKGNHEQMLLDFLENPSGKMHYYLSQGGMETIQSLIADSLDKKMTPEGLAKRVKEEASELIDFIRKLPLYYE-EGKYV-FVHAGV--DLTKKDWHDTEERD-FFWIREPFLFGQNKT-------------GKVFIFGHTPVQNLHIDESSGIWVSEDKTRLDIDGGAVFGGELHGVVVEEKVITKSFSVKK
2QJC Chain:A ((8-249))
YANVVTLPNVTGRVIIVGDIHGCRAQLEDLLRAVSFKQGSDTLVAVGDLVNKGPDSFGVVRLLKRL----GAYSVLGNHDAKLLKLVKKLS-------------------------------LAPLAQSIPTDVETYLSQLPHIIRIPAHNVMVAHAGLHPQRPVDRQYEDEVTTMRNLIEKVTLTATEETNDGGKPWASMWRGPETVVFGHDARRGLQEQYKPLAIG--------LDSRCVYGGRLSAAVFPGGCIISVPGWNG
General information:
TITO was launched using:
RESULT:
Template:
2QJC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102569 for 1531 contacts (-67.0/contact) +
2D Compatibility (PS) -21129 + (NN) -10843 + (LL) 2168
1D Compatibility (HY) -10400 + (ID) 2450
Total energy: -145223.0 ( -94.85 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_2QJC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QJC-query.scw
PDB file :
Tito_Scwrl_2QJC.pdb
: