Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNPTFGEKIDNVDYRSRFGVYAIIPNPTHDKIILVQAPNGAWFLPGGEIEENENHLEALTRELIEELGYSATIGHYYGQADEYFYSRHRDTYYYNPAYIYEVTAYHKEQ---APLEDFNHLAWFPIQEAKEKLKRGS-HRWGVQAWEKNHHSRK
2PQV Chain:A ((8-146))
------DFRTKVDNTVFGVRATALIVQN--HKLLVTKD-KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVVENRFEVD--GVSYHNIEFHYLVDLLEDAPLTMQEDEKRQPCEWIDLDKLQNIQLVPVFLKTALPDWEGQLRHIH
General information:
TITO was launched using:
RESULT:
Template:
2PQV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41315 for 970 contacts (-42.6/contact) +
2D Compatibility (PS) -14438 + (NN) -4638 + (LL) 324
1D Compatibility (HY) -2400 + (ID) 1350
Total energy: -63817.0 ( -65.79 by residue)
QMean score : 0.290
(partial model without unconserved sides chains):
PDB file :
Tito_2PQV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PQV-query.scw
PDB file :
Tito_Scwrl_2PQV.pdb
: