Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVLYGHSTQDLPETNARVVGGTEAGRNSWPSQISLQYRSGGSRYHTCGGTLIRQNWVMTAAHCVDYQ---KTFRVVAGDHNLSQNDGTEQYVSVQKIVVHPYWNSDNVAAGYDIALLRLAQSVTLNSYVQLGVLPQEGA---ILANNSPCYITGWGKTKTNGQLAQTLQQAYLPSVDYAICSSSSY---WGSTVKNTMVCAGG-DGVRSGCQGDSGGPLHCLVNGKYSVHGVTSFVSSRGCNVSRKPTVFTQVSAYISWINNVIASN
4JZE Chain:H ((1-242))
------------------IVGGKVCPKGECPWQVLLLVN--G--AQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPSTYVPGTT--NHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQ--GCATVGHFGVYTRVSQYIEWLQKLMRSE
General information:
TITO was launched using:
RESULT:
Template:
4JZE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -159150 for 1940 contacts (-82.0/contact) +
2D Compatibility (PS) -25591 + (NN) -9392 + (LL) 1372
1D Compatibility (HY) -14000 + (ID) 4000
Total energy: -210761.0 ( -108.64 by residue)
QMean score : 0.446
(partial model without unconserved sides chains):
PDB file :
Tito_4JZE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JZE-query.scw
PDB file :
Tito_Scwrl_4JZE.pdb
: