Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLKSFITVTLALGMIATTGATVTSNEVSAAEKDKLPATQKAKEMQNVPYTIAVDGIMAFNQSYLNLPKDSQLSYLDLGNKVKALLYDERGVTPEK--------------IRNAKSAVYTITWKDGSKKEVDLKKDSY------------TANLFDSNSIKQIDINVKTK
3EA6 Chain:A ((92-216))
--------------------------------------------SRNIPINIWINGNHKTISTNKVSTNKKFVTAQEIDVKLRKYLQEEYNIYGHNGTKKGEEYGHKSKFYSGFNIGKVTFHLNNNDTFSYDLFYTGDDGLPKSFLKIYEDNKTVESEKF-HLDVDISYK
General information:
TITO was launched using:
RESULT:
Template:
3EA6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17838 for 661 contacts (-27.0/contact) +
2D Compatibility (PS) -10580 + (NN) -1783 + (LL) 3764
1D Compatibility (HY) -3200 + (ID) 650
Total energy: -30287.0 ( -45.82 by residue)
QMean score : 0.448
(partial model without unconserved sides chains):
PDB file :
Tito_3EA6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EA6-query.scw
PDB file :
Tito_Scwrl_3EA6.pdb
: