Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | -MLSVIILAAGKGTRMHSSLPKTLHTICGEPMLFYILEVAFSIS-NDVHLVLHHQQERIKEAVSKRFKGVIFHAQIVEKYSGTGGAIMQENKTPIPTQHERVLILNADMPLITKDALTPLLESHNN---AIGLLHLADPKGYGRVILENHQVKKIVEEKDANDEEKTIKSVNAGVYFFERKFLERYLPKLHDQNAQKEYYLTDLIALGIKGNEKIDAIFL-EEECFLGVNSQTERAKAEEIMLERLRKNAMDLGVVMQLPSSIYLEKGVSFKGECVLEQGVRLIGNCLI------------------ENARIKAYSVIEESQII-NSSVGPFAHARPKSVICDS-HVGNFVETKNAKL-QGTKAGHLSYLGDCEIGKNTNVGAGVITCNYDGKKKHQTIIGENVFIGSDSQLVAPINIGSNVLIGSGTTITKDIPSGSLSLSRTPQTNIENGYFKFFKKP |
1HV9 Chain:A ((4-451)) | NAMSVVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLLKQALKD--DNLNWVLQ--AEQLGTGHAMQQAAPFF--ADDEDILMLYGDVPLISVETLQRLRDAKPQGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATDEQRQIQEINTGILIANGADMKRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQSEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGENALAISRVPQTQKEG-----WRRP |
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General information:
TITO was launched using:
| RESULT:
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Template: 1HV9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -271157 for 3354 contacts (-80.8/contact) +
2D Compatibility (PS) -46084 + (NN) -15278 + (LL) 940
1D Compatibility (HY) -30400 + (ID) 8300
Total energy: -370279.0 ( -110.40 by residue)
QMean score : 0.506
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