Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKVFDYEDVQLIPNKCIVNSRSECDTTVILGK-HAFKMPIVPANMQTIINESIAEFLAENGYFYIMHRFNG-SA-------RI-----------------------PFVKKMKERQLI--------------------------------------------------------------------------------------------------SSISVGVKKEECLFVEELAKQGLTPDYITIDIAHGHSNSVIEMIQRIKTRLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA---RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESSGETKIENGIAYKEYFGSASEFQKGEKKNIEGKKIWIQHKGSLKNTLIEMHQDLQSSISYAGGRDLEAIRKV-DYVIVKNSIFNGDTI |
| 3USB Chain:A ((33-493)) | -EGLTFDDVLLVPAKSDVL-PREVSVKTVLSESLQLNIPLISAGMDTVTEADMAIAMARQGGLGIIHKNMSIEQQAEQVDKVKRSESGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRFIQDYSIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEFPNSAKDKQGRLLVGAAVGVTADAMTRIDALVKAS--VDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVP--QLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLGSMFAGVAESPGETEIYQGRQFKV----------------------VPYKGPLADTVHQLVGGLRAGMGYCGAQDLEFLRENAQFIRMSGAGLL---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3USB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -184726 for 2494 contacts (-74.1/contact) +
2D Compatibility (PS) -32392 + (NN) -11558 + (LL) 1564
1D Compatibility (HY) -19200 + (ID) 5050
Total energy: -251362.0 ( -100.79 by residue)
QMean score : 0.499
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