Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIKIQKIHPNALIPKYQTEGSSGFDLHAVEEVVIKPHSVGLVRIGICLSLEVGYELQVRTRSGLALNHQVMVLNSPGTVDNDYRGEIKVILANLS-DKDFKVQVGDRIAQGVVQKTYKAEFIECEQLD-ETSRGSGGFGSTGVSKA
1SJN Chain:A ((4-132))
-TLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDE-----------------
General information:
TITO was launched using:
RESULT:
Template:
1SJN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69377 for 856 contacts (-81.0/contact) +
2D Compatibility (PS) -13254 + (NN) 267 + (LL) -68
1D Compatibility (HY) -8800 + (ID) 2450
Total energy: -93682.0 ( -109.44 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_1SJN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SJN-query.scw
PDB file :
Tito_Scwrl_1SJN.pdb
: