Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAFYFEEPSRTFSEFLLVPGYSSAECVPTNVSLKTPIVKFKKGEESAITMNIPLVSAIMQAVSDDNMGIALATEGGVSFIFGSQSIESEAAMVSRVKNHKAGFVISDSNISPDKTLQDILDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRVTRMSPDEKVADFMTPFEKLVTANKSTTLKEANNIIWDNKLNALPLVDDNEHLVHMVFRKDYDSNKENKLELLDSSKRYVVGAGINTRDYEERVPALVEAGADILCIDSSEGYSEWQKRTLDYVRGKYGDTVKVGAGNVVDRDGFRYLAEAGADFVKVGVGGGSICITREQKGIGRGQATALIDVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFSRFDESPTNKVNLNGTYMKEYWGEGANRARNWQRYDLGG--DKKLSFEEGVDSYVPYAGSLKDNVAISLSKVRSTMCNCGALNIPELQQKAKITLVSSTSIVEGGAHDVVVKDASNNLIK |
2CU0 Chain:A ((10-480)) | ----KAIKGYTFDDVLLIPQATEV--EPKDVDVSTRIT-------PNVKLNIPILSAAMDTVTEWEMAVAMAREGGLGVIHRNMGIEEQVEQVKRVKRAE-----------------------------------------------------------------------------------------------------------------------KYKNAVRDENGELLVAAAVSP-FDIKRAIELDKAGVDVIVVDTAHAHNLKAIKSMKEMRQKV--DADFIVGNIANPKAVDDL--TFADAVKVGIGPGSICTTRIVAGVGVPQITAVAMVADRAQE------YGLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAGTKEAPGKEVIINGRKYKQYRGMGSLGAMMK-------YMKTRKFVPEGVEGVVPYRGTVSEVLYQLVGGLKAGMGYVGARNIRELKEKGEFVIITHAGIKESHPHDIIITNEAPN--- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2CU0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -173476 for 3139 contacts (-55.3/contact) +
2D Compatibility (PS) -37492 + (NN) -11905 + (LL) 8924
1D Compatibility (HY) -20000 + (ID) 5400
Total energy: -239349.0 ( -76.25 by residue)
QMean score : 0.458
|
|
|