Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLRL-QFHKKLPF--HDLNIDYTFEK-PVTAMMGASGSGKSTLFQCVSGLKSIDGGIIEFDGTPWDDSNISLHLPVTERKVGYLFQNLALFPNMNVYENIAFGLKVKKKKKKEQAEIQQQVRKMSDYLQISHLLYSSVQKLSGGEKQRVAMARAMITEPKLLLLDEPFNGLDEETRLICMKLVGQMAKDFHIPVIFVTHYASEAEMMTEEILVMREGRLEKRKS
1V43 Chain:A ((12-232))
EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYL------PPKDRNISMVFQ------HMTVYENIAFPL--KKF---PKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGS
General information:
TITO was launched using:
RESULT:
Template:
1V43.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127174 for 1610 contacts (-79.0/contact) +
2D Compatibility (PS) -22113 + (NN) -6594 + (LL) 1348
1D Compatibility (HY) -16800 + (ID) 3600
Total energy: -174933.0 ( -108.65 by residue)
QMean score : 0.642
(partial model without unconserved sides chains):
PDB file :
Tito_1V43.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V43-query.scw
PDB file :
Tito_Scwrl_1V43.pdb
: