Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVHIEAKQGEIAETILLPGDPLRAKYIAETFLE-DVVLFNQVRGMLGFTGTYKGEKVSVMGTGMGIPSISIYVNELIQSYDVKNLIRVGTMGGIQADVKVRDVVIAQAASTDSQINRNTFAGVDFAPVADFSLLKKAYDAGIEKGLSLKVGNVFSADRFYNDQLDK-QQLADYGVLGIEMEAAALYTLAQKYGRRALAILTVSDHIFTGEETSAEERQTTFNDMIVVALEAAIK
3UAW Chain:A ((2-234))
-SVHIEAKQGEIAESILLPGDPLRAKYIAE-TFLEDVTCYNNVRGMLGFTGTYKGKRVSVQGTGMGVPSISIYVNELIQSYGVKNLIRVGTCGAIQKDVKVRDVIIAMTACTDSNMNRLTFPGFDFAPAANFDLLKKAYDAGTEKGLHVRVGNVLTADVFYRESMDMVKKLGDYGVLAVEMETTALYTLAAKYGVNALSVLTVSDHIFTGEETTSEERQTTFNEMIEIALDAAIQ
General information:
TITO was launched using:
RESULT:
Template:
3UAW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -167697 for 2121 contacts (-79.1/contact) +
2D Compatibility (PS) -24187 + (NN) -2810 + (LL) 260
1D Compatibility (HY) -28800 + (ID) 8600
Total energy: -231834.0 ( -109.30 by residue)
QMean score : 0.564
(partial model without unconserved sides chains):
PDB file :
Tito_3UAW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UAW-query.scw
PDB file :
Tito_Scwrl_3UAW.pdb
: