Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVGLIWAQATSGVIGRGGDIPWRLPEDQAHFREITMG------------H-TIVMGRRTWDSLPAKVRPLPGRRNVVLSRQADFMA---------------SG-AEVVGSLEEALT----------SPETWVIGGGQVYALALP--Y---ATRCEVTEVDIGLPREAGDALAPVLDE------TWRGETGEW-----RFSRSGLRYRLYSYHRS
3RG9 Chain:A ((28-239))
PFSVVVASDEKGGIGDGGTIPWEIPEDMQYFRRVTTNLRGKNVKPSPSKRNAVVMGRKTWDSLPPKFRPLSNRLNVVLSRSATKEQLLAGIPDPIKRAEAANDVVAVNGGLEDALRMLVSKEHTSSIETVFCIGGGTIYKQALCAPCVNVLQAIHRTVVRPASNS--CSVFFDIPAAGTKTPEGLELVRESITDERVSTGAGGKKYQFEKLVPR
General information:
TITO was launched using:
RESULT:
Template:
3RG9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91674 for 1170 contacts (-78.4/contact) +
2D Compatibility (PS) -17300 + (NN) -7929 + (LL) 248
1D Compatibility (HY) -10000 + (ID) 2700
Total energy: -129355.0 ( -110.56 by residue)
QMean score : 0.612
(partial model without unconserved sides chains):
PDB file :
Tito_3RG9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RG9-query.scw
PDB file :
Tito_Scwrl_3RG9.pdb
: