Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNPAKTGMFDLDERIAMVKESTTHLPNLRVQVGHGLVVDFVRSCGMTAIVKGLRTGTDFEYELQMAQMNKHI-AGVDTFFVATAPRYSFVSSSLAKEVAMLGGDVSELLPEPVNRRLRDRLNTERT
4NAT Chain:A ((3-159))
HTIAVIPGSFDPITYGHLDIIERSTDRFDEIHVCVL------GTFSLEERMDLIEQSVKHLPNVKVHQFSGLLVDYCEQVGAKTIIRGLRAVSDFEYELRLTSMNKKLNNEIETLYMMSSTNYSFISSSIVKEVAAYRADISEFVPPYVEKALKKKF-----
General information:
TITO was launched using:
RESULT:
Template:
4NAT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113693 for 1153 contacts (-98.6/contact) +
2D Compatibility (PS) -16051 + (NN) -6047 + (LL) 460
1D Compatibility (HY) -18400 + (ID) 3350
Total energy: -157081.0 ( -136.24 by residue)
QMean score : 0.493
(partial model without unconserved sides chains):
PDB file :
Tito_4NAT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NAT-query.scw
PDB file :
Tito_Scwrl_4NAT.pdb
: