Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVHGFLLERVSVVRDE---ATVLRQVSAHFPAGRCSAVRGASGSGKTTLLRLLNRLIDPTSGKVWLDGVPLTDLDVLVLRRRVGLVAQAPVVLTDAVLNEVRVGRPD--LPEGRVTELLARLCLGQSA----------------REAFLPHQRSALRTALIPAIDSTKVVGLISLPGAMSGLILAGVDPLTAIRYQIVVMYLLLAATAVAALTCARLAERALFDRAHRLVSLPAATRRA
4Q9H Chain:A ((1030-1230))
----NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQ-----------PHILLLDEATSALDTESEKVVQEALDK--A-REGRTCIVIAHRL---------------------
General information:
TITO was launched using:
RESULT:
Template:
4Q9H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147270 for 1361 contacts (-108.2/contact) +
2D Compatibility (PS) -19179 + (NN) -5287 + (LL) 3892
1D Compatibility (HY) -7600 + (ID) 2000
Total energy: -177444.0 ( -130.38 by residue)
QMean score : 0.302
(partial model without unconserved sides chains):
PDB file :
Tito_4Q9H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Q9H-query.scw
PDB file :
Tito_Scwrl_4Q9H.pdb
: