Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADPRPDPDELARRAAQVIADRTGIGEHDVAVVLGSGWLPAVAALGSPTTVLPQAELPGFVPPTAAGHAGELLSVPIGAHRVLVLAGRIHAYEGHDLRYVVHPVRAARAAGAQIMVLTNAAGGLRADLQVGQPVLISDHLNLTARSPLV-------GGEFVDLTDAYSPRLRELARQSD----PQLAEGVYAGLPGPHYETPAEIRMLQTLGADLVGMSTVHETIAARAAGAEVLGVSLVTNLAAGITGEPLSHAEVLAAGAASATRMGALLADVIARF
3ODG Chain:A ((16-284))
---------ELPFQAVKYIQKIKPGFKPQIAFILGSGLGDLVDQITND-TTISYADIPGFPVSSVHGHAGELVLGDLCGVPVMCMKGRGHFYEGKGMSIMTNPVRTFKLMGCEFLFCTNAAGSLRPEVLPGSVVMLKDHINTMPGTPLVGPNDDRFGPRFFSLANAYDKDLRADMAKIAQQLDIPLTEGVFVSYPGPCFETPAEIRMMQIIGGDVVGMSVVPEVLSAAHCGLKVIALTAITNLAEGLSDVVLSHEQTLKFAKVASVNFTKLIEAFLKSK
General information:
TITO was launched using:
RESULT:
Template:
3ODG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -185791 for 2245 contacts (-82.8/contact) +
2D Compatibility (PS) -27891 + (NN) -6129 + (LL) -144
1D Compatibility (HY) -22400 + (ID) 4550
Total energy: -246905.0 ( -109.98 by residue)
QMean score : 0.712
(partial model without unconserved sides chains):
PDB file :
Tito_3ODG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ODG-query.scw
PDB file :
Tito_Scwrl_3ODG.pdb
: