Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSAPVEALFQPFRLGALELPTRVVMAPMTRNFSPGGVPNAKVVEYYRRRAAAGVGLIVSEGTTVGHKAANGYPNVPRFYGEDALAGWKQVVDAVHAEGGRIVPQLWHVGSVRRLGVEPDASVPGYGPMEKAKD-------------GKVLVHGMSKADIQEVIAAFAQAARDAQAIGMDGVEIHGAHGYLIDQFFWEGSNQRDDEYGGSLANRSRFAVELVRAVRAAVGADFPIIFRFSQWK-QQDYSARLVETPEGLREFLAPLVEA------GVDIFHCSTRRFWIPE------FEGSEL-N-LAGWTRELTGKPTITVGNVGLDGSEFLQFFGKTDEVAQPASIDGLVERLDKGEFDLVAVGRALLVDPEWAVKVREGRIGDIKPFSREALASLV |
| 2HSA Chain:B ((17-372)) | ------PLFSPYKMGKFNLSHRVVLAPMTRCRALNNIPQAALGEYYEQRATAG-GFLITEGTMISPTS-AGFPHVPGIFTKEQVREWKKIVDVVHAKGAVIFCQLWHVGRASHEVYQPAGAAP-ISSTEKPISNRWRILMPDGTHGIYPKPRAIGTYEISQVVEDYRRSALNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGA-DRVGVRVSPAIDH--LDAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLRNAYQGTFICSGGY-TR------------ELGI--------EAVAQGDADLVSYGRLFISNPDLVMRIKLNA--PLNKYNRKTFYTQD |
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General information:
TITO was launched using:
| RESULT:
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Template: 2HSA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -171484 for 2908 contacts (-59.0/contact) +
2D Compatibility (PS) -36056 + (NN) -21005 + (LL) 1236
1D Compatibility (HY) -22400 + (ID) 5500
Total energy: -255209.0 ( -87.76 by residue)
QMean score : 0.583
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