Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIPLIGQLYRNNNVVTSIHGRGLINRSVIAIMKAHRFARHRMADDAELSVHETFPILKAMSELKLGAASVDLGKMVAKFKAEGNGRSIEDFVKAELAEVVGKQNGDAREGTDVVLYGFGRIGRLLARILIEKTGGGDGLRLRAIVVRKGAENDLVKRASLLRRDSVHGPFDG-TITIDEENNTLTANGNLIQVIYSNDPASIDYTQYGIKNALLVDNTGKWRDAEGLGQHLKCPGIDRVVLTAPGKGALKNIVHGINHTDIGADDKIISAASCTTNAIVPVLKAVNDQYGIVNGHVETVHSYTNDQNLIDNFHK-GSRRGRSAPLNMVITETGAATAAAKALPVLKGKLTGNAIRVPTPNVSMAILNLNLEKATTREEINEYLRQMAMHSDLQKQIDFVSSQEVVSTDFVGSRHAGVVDAEATIC-NDNRVVLYVWYDNEFGYSCQVVRVMEDMAGVNPPAFPR |
| 3V1Y Chain:O ((2-336)) | ------------------------------------------------------------------------------------------------------------GKIKIGINGFGRIGRLVARVALQS----EDVELVAVNDPF---ITTDYMTYMFKYDTVHGQWKHSDIKIK-DSKTLLLGEKPVTVFGIRNPDEIPWAEAGAE--YVVESTGVFTDKEKAAAHLKG-GAKKVVISAPSKD-APMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSAS-EGKLKGIIGYVE-EDLVSTDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMAKT------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3V1Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -226552 for 2926 contacts (-77.4/contact) +
2D Compatibility (PS) -36292 + (NN) -14591 + (LL) 8020
1D Compatibility (HY) -22800 + (ID) 6100
Total energy: -298315.0 ( -101.95 by residue)
QMean score : 0.564
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