Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLSKITIAS---DAVNVIIEISANAEPVKYEFDKELGLLRVDRFLSTAMVYPCNYGFVPNTCAGDGDPVDVLVLTQFPLAPGVLISVRPVGALLTKDEKGKDEKVLAVPVSSVDSYYDHVKNCSDLPKNLLDKITHFFLHYKDLEKEKTVTVGEWVDAEKAKKIVESAIKSRN
3GVF Chain:A ((23-195))
-SFSNVPAGKDLPQDFNVIIEIPAQSEPVKYEADKALGLLVVDRFIGTGMRYPVNYGFIPQTLSGDGDPVDVLVITPFPLLAGSVVRARALGMLKMTDESGVDAKLVAVPHDKVCPMTANLKSIDDVPAYLKDQIKHFFEQYKALEKGKWVKVEGWDGIDAAHKEITDGVANFK
General information:
TITO was launched using:
RESULT:
Template:
3GVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102972 for 1336 contacts (-77.1/contact) +
2D Compatibility (PS) -18387 + (NN) -3886 + (LL) 208
1D Compatibility (HY) -16000 + (ID) 4050
Total energy: -145087.0 ( -108.60 by residue)
QMean score : 0.598
(partial model without unconserved sides chains):
PDB file :
Tito_3GVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GVF-query.scw
PDB file :
Tito_Scwrl_3GVF.pdb
: