Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE
1NDP Chain:A ((6-155))
VNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVESANREIALWFKPEELLTEVKPN-PNLYE
General information:
TITO was launched using:
RESULT:
Template:
1NDP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68782 for 1150 contacts (-59.8/contact) +
2D Compatibility (PS) -15717 + (NN) -3293 + (LL) -76
1D Compatibility (HY) -14000 + (ID) 4200
Total energy: -106068.0 ( -92.23 by residue)
QMean score : 0.525
(partial model without unconserved sides chains):
PDB file :
Tito_1NDP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NDP-query.scw
PDB file :
Tito_Scwrl_1NDP.pdb
: