Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKG-------TVGHSFKHWP---KSTRTITPSFTSNGF-GMPDMNAISMDTSPAFTFNEEHISGETYAEYL----QVVANHYELNIFENTVVTNISADDAYYTIATTT---ETYHADYIFVATGDYNFP-KKP---FKYGIHYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFDS--GQSVHTPHEPILATGFDATKNPI-VQQ-LFVTTN-QDIKLTTHDESTRYPNIFMIGATVENDNAKLCYIYKFRARFAVLAHLLTQREGLPAKQEVIENYQKNQMYLDDYSCCEVSCTC |
3LAD Chain:A ((1-344)) | SQKFDVIVIGAGPGGYVAAIKSAQLGL-KTALIEKYKGKEGKTALGGTCLNVGCIPSKA-LLDSSYKFHEAHESFKLHGIST-GEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGK-LLA--GKKVEVTAADGSSQVLDTENVILASGSKPVEIPPAPVDQDVIVDSTGALDFQN-VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP-AVD------EQVAKEAQKILTKQ-GLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYCA-TSVPGVYAIGDVVRGAM----LAHKASEEGVVVAERIAGHK------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3LAD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -169668 for 2582 contacts (-65.7/contact) +
2D Compatibility (PS) -34209 + (NN) -11575 + (LL) 2980
1D Compatibility (HY) -12800 + (ID) 2500
Total energy: -227772.0 ( -88.22 by residue)
QMean score : 0.372
|
|
|