Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLSVIILAAGKGTRMHSSLPKTLHTICGEPMLFYILEVAFSIS-NDVHLVLHHQQERIKEAVSKRFKGVIFHAQIVEKYSGTGGAIMQENKTPIPTQHERVLILNADMPLITKDALTPLLESHNN-----AIGLLHLADPKGYGRVIL-ENHQVKKIVEEKDANDEEKTIKSVNAGVYFFERKFLERYLPKLHDQNAQKEYYLTDLIALGIKGNEKIDAIFLE-EECFLGVNSQTERAKAEEIMLERLRKNAMDLGVVMQLPSSIY------------LEKGVSFKGECVLEQGVRLIGNCLIENARIKAYSVIEESQIINSS------VGPFAHARPKSVICDS-HVGNFVETKNAKL-QGTKAGHLSYLGDCEIGKNTNVGAGVITCNYDGKKKHQTIIGENVFIGSDSQLVAPINIGSNVLIGSGTTITKDIPSGSLSLSRTPQTNIENGYFKFFKKP--- |
1HM9 Chain:A ((11-468)) | SNFAIILAAGKGTRMKSDLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAGQTEFVT-----QSEQLGTGHAVMMT-EPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNPFGYGRIVRNDNAEVLRIVEQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRRRINHKHMVNGVSFVNPEATYIDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKGSSIGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKTVIGDNVFVGSNSTIIAPVELGDNSLVGAGSTITKDVPADAIAIGRGRQINKDEYATRLPHHPKNQ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1HM9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -312379 for 3541 contacts (-88.2/contact) +
2D Compatibility (PS) -47024 + (NN) -15721 + (LL) 564
1D Compatibility (HY) -22800 + (ID) 8550
Total energy: -405910.0 ( -114.63 by residue)
QMean score : 0.496
|
|
|