Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIKIQKIH--PNALIPKYQTEGSSGFDLHAVE----EVVIKPHSVGLVRIGICLSLEVGYELQVRTRSGLALNHQVMVLNSPGTVDNDYRGEIKVILANLSDKDFKVQVGDRIAQGVVQKTYKAEFIECEQLDETSRGSGGFGSTGVSKA
3MDX Chain:A ((32-172))
--LGIIRLEHAKGLDLPAYETAGSAGMDLRAAVAEDRQIVLLPGRRTLVPTGLILEIPQGYEVQIRPRSGLAFKNGITCLNTPGTIDSDYRGEVKVLLINLGDDDFRIERGMRIAQAVFAPVIQPKIEERAK-----RGAGGF--------
General information:
TITO was launched using:
RESULT:
Template:
3MDX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74689 for 843 contacts (-88.6/contact) +
2D Compatibility (PS) -14012 + (NN) -2367 + (LL) 552
1D Compatibility (HY) -12000 + (ID) 2850
Total energy: -105366.0 ( -124.99 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_3MDX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MDX-query.scw
PDB file :
Tito_Scwrl_3MDX.pdb
: