Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MLVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVE-KGGIGQVSFPMVADITKSISRDYDVLFEE----AIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWRKGDKGM--KATHQGVAEYLKENSIKL
1QMV Chain:A ((3-198))
SGNARIGKPAPDFKATAVV-DGAFK-EVKLSD-YKGKYVVLFFYPLDFTF-VPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKE-GGLGPLNIPLLADVTRRLSEDYGVLKT-DEGIA--YRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKPGSDTIKP--NVDDSKEYFSKHN---
General information:
TITO was launched using:
RESULT:
Template:
1QMV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112214 for 1376 contacts (-81.6/contact) +
2D Compatibility (PS) -19829 + (NN) -3154 + (LL) 1212
1D Compatibility (HY) -17200 + (ID) 4350
Total energy: -155535.0 ( -113.03 by residue)
QMean score : 0.570
(partial model without unconserved sides chains):
PDB file :
Tito_1QMV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QMV-query.scw
PDB file :
Tito_Scwrl_1QMV.pdb
: