Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKRQLGNAGLVTSELGFGCMGLNYHRGPAKDRNEMIEVVRTAMDAGITMFDTAEVYGPYTNEELVGEALVG---KRNHVQIATKGGFKINGLNNEVDSRPESIKAAVEGSLKRLKTDYIDLYYIHRIDPSIPIEEVAGTIQNLKQEGKILHWGLSEASAKTIRRAHKV--EPLAAVESEYSIWWREAEKEVFPVLEELGIGLVAYSPLGRGYLTGKLDINADFNANDNRGGLPRFQKEAMEANQVLLDFMKEIADEQNVTTAQLALAWILDQKPWIVPIPGTTRPSRIEENIASTEIHFDDGARQKIADALSQIEIVGDRYSAAENKRIGK |
| 3UP8 Chain:A ((24-284)) | --MHAVSSNGANIPALGFGTFRMS--------GAEVLRILPQALKLGFRHVDTAQIYG---NEAEVGEAIQKSGIPRADVFLTTKVWVDN--------YRHDAFIASVDESLRKLRTDHVDLLLLHWPGSDVPMAERIGALNEVRNAGKVRHIGISNFNTTQMEEAARLSDAPIATNQVEYHPYLDQT--KVLQTARRLGMSLTSYYAMANGKVPAD-------------------------------PLLTEIGGRHGKTAAQVALRWLVQQQDV-IVLSKTATEARLKENFAIFDFALTREEMAAVRELARPNG---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3UP8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -125542 for 2208 contacts (-56.9/contact) +
2D Compatibility (PS) -27396 + (NN) -6945 + (LL) 3320
1D Compatibility (HY) -18000 + (ID) 3350
Total energy: -177913.0 ( -80.58 by residue)
QMean score : 0.474
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